Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNPQYPTRLPCGSRVLDLARPHVMGILNVTPDSFSDGGRYDRLDDALRHAERMVLEGATLIDVGGESTRPGARSVSPTEELERVAPVVERIARELDVVISVDTSTPAVMRETARLGAGLINDVRSLQRDGALDAAVDSGLAVCLMHMRGEPQTMQDAPAYQDVVAEVGAFLQERVDACVAAGIDRERLLLDPGFGFAKTLEHNLVLFRHLQALHGLGLPLLVGVSRKSMIGKVLGREVDERLYGSLALAALALAKGARIIRVHDVAATVDVMRMISAVEMAD
3TZN Chain:A ((9-275))
---------------TLDLSRPQVMGIL-------------NNLDQALQHAQRMLSAGATLIDIGG--------------ELDRVVPVVEALAQRFDVWLSVDTSKAAVITESAHAGAHLINDIRSLQEPGALEAAAKTGLPVCLMHMQ-------HSPYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLNVPPQQRVIGSVACAVIAAMQGAQIIRVHDVKETVEAMCIVEATRSA-
General information:
TITO was launched using:
RESULT:
Template:
3TZN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203192 for 1949 contacts (-104.3/contact) +
2D Compatibility (PS) -25598 + (NN) -13394 + (LL) 500
1D Compatibility (HY) -28000 + (ID) 6550
Total energy: -276234.0 ( -141.73 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_3TZN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TZN-query.scw
PDB file :
Tito_Scwrl_3TZN.pdb
: