Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKNKTFLAAALVALAASFPVHAATDYTRTRYPIVLSHGLFGF-KSVGPVDYWHAIVPALEKDGAKVFATSQSPVNSNEV---RGEQLLAQVEEVLALTGAEKVNLIGHSQGGMTVRYVAGVAPQLVASVTTMGTPHKGTPVADAVTGFSEFLGPIG--TEVIASAVEALFSVVDIVDGGEWVKGDALAALNSLNTPGTARFNQRFPQA---IPASACGQGA--ETVAGVRY--YSMSGT--------GSLT--------------NALDPSSAGLAVTGLLF----GEANDGLVGQCSSHLGSVVKDNYRMDHLDEVNQLLGLVSLFESDPTQVYRQHANRLRNVGL |
| 1YS2 Chain:X ((1-320)) | -----------------------ADNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAY-DPTGLSSTVIAAFVN-VFGI--LTSSSNNTNQDALAALKTLTTAQAATYNQNYPSAGLGAPGS-CQTGAPTETVGGNTHLLYSWAGTAIQPTISVGGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLKLAGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48324 for 2430 contacts (-19.9/contact) +
2D Compatibility (PS) -30196 + (NN) -10529 + (LL) 2868
1D Compatibility (HY) -20800 + (ID) 7150
Total energy: -114131.0 ( -46.97 by residue)
QMean score : 0.373
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