Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFNTEVQPGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQSVLELTHNWGSESDDSQ-YHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVKPLDRG-MKNVAFISDPDGYWVEIVQASLNGEMGRG
3VW9 Chain:A ((17-178))
-----EAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL-----------
General information:
TITO was launched using:
RESULT:
Template:
3VW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80440 for 1032 contacts (-77.9/contact) +
2D Compatibility (PS) -17364 + (NN) -10510 + (LL) 512
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -130302.0 ( -126.26 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_3VW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VW9-query.scw
PDB file :
Tito_Scwrl_3VW9.pdb
: