Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGTLYIVSAPSGAGKTSLVKALLDAAPEVRVSVSHTTRGMRPGEVDGVNYHFTSREEFLAMLERNEFLEHAEVFGNLYGTSQRWVEKTLAEGLDLILEIDWQGAQQVRRLMPEAQSIFILPPSQEALRQRLTNRGQDSDEVIERRMREAVSEMSHYVEYDHLVINDDFAHALDDLKAIFRARQLRQDAQQQRHAELLGRLLA
3TR0 Chain:A ((6-205))
-KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHIISAERLQRDVQEKKLSRLLAEL--
General information:
TITO was launched using:
RESULT:
Template:
3TR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60910 for 1490 contacts (-40.9/contact) +
2D Compatibility (PS) -23065 + (NN) -18318 + (LL) 528
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -126865.0 ( -85.14 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3TR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR0-query.scw
PDB file :
Tito_Scwrl_3TR0.pdb
: