Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLS---TGF-SKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRGIVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGMDGQWLVEGSGTDLKVLCRDTAGRVIGYALTGAAVNEKLALNKELPGLMA |
| 1XHC Chain:A ((9-359)) | ----SKVVIVGNGPGGFELAKQ---LSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRL---FPYSLDWYRKRGIEIRLAEEAKL--IDRGRKVVITEKGEVPYDTLVLATGARAREPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKIC-----AIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEPRRYNFKFRSTVFKFGKLQIAIIGNTKG-EGKWIEDNT----KVFY-------IG-AVVFNDIRKATKLE-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240806 for 2896 contacts (-83.2/contact) +
2D Compatibility (PS) -36660 + (NN) -10627 + (LL) 2188
1D Compatibility (HY) -23600 + (ID) 4800
Total energy: -314305.0 ( -108.53 by residue)
QMean score : 0.404
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