Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIILITNDDGFESEGIKLLKEVARNFASEIWIVAPDTDRSGAARSLDHPVKQSIRINQHNEREFS---VSGTPADCVIIALNKIMDKKPDLVLSGVNIGSNVGDDVCYSGTIGAVMEGAARSIPSIALSQAYHGGI-NWYNTKIFAPKVIAKLVKVGWPKNIAMSINFSATEKVKGVEFAEQGEYNIDGDLTFTENPDGSLSLNWSREHLGSGSVG----KIKEGFITITPIKLDFTDYDTLNAMKNSYAEEFSSIVN
2E6H Chain:C ((1-237))
MRILVTNDDGIYSPGLWALAEAASQF-GEVFVAAPD----GHAITIAHPVRAYPHPSPLHAPHFPAYRVRGTPADCVALGLH--LFGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNGEVPDFAGLRPWLLRTLETLLRLERP----FLVNVNLPLRPKGFLWTRQSVRAYEGVVIPGEDPMGRPFYWFAPRPLKEAEEGTDRWAVAQGFVSATPLRLDLTDETRL----------------
General information:
TITO was launched using:
RESULT:
Template:
2E6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93838 for 1742 contacts (-53.9/contact) +
2D Compatibility (PS) -24466 + (NN) -11389 + (LL) 1856
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -145137.0 ( -83.32 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2E6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E6H-query.scw
PDB file :
Tito_Scwrl_2E6H.pdb
: