Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSQYAEMSLVYDQLTQD--QPYEKWFEIVKNHCKDE----SNILDIGCGTGSLTVQL-EALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK-- |
| 4OQD Chain:A ((12-250)) | ADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM--------PGGPSGRGLFTGLPGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127656 for 1888 contacts (-67.6/contact) +
2D Compatibility (PS) -24452 + (NN) -3928 + (LL) 392
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -163044.0 ( -86.36 by residue)
QMean score : 0.363
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