Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGENAKQAILRELKEETGIVPQCLTFLNREWFSE--RSYFVDHFIAKYNGAKDIITLQEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI
2YVP Chain:A ((40-165))
----------------------------PVAASFVLPVTERGTALLVRQYRHP-TGKFLLEVP-AGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYA
General information:
TITO was launched using:
RESULT:
Template:
2YVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56014 for 895 contacts (-62.6/contact) +
2D Compatibility (PS) -13926 + (NN) -6842 + (LL) 1796
1D Compatibility (HY) 400 + (ID) 1350
Total energy: -75936.0 ( -84.84 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_2YVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVP-query.scw
PDB file :
Tito_Scwrl_2YVP.pdb
: