Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRADK---NSWGIIGGCMELGESSVDTLKREFFEETGLRVEP--IRLLNVYTNFQDS--YPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVNEQHQLILDEYFSQTFQMGR
1RYA Chain:A ((6-154))
-------QEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEE-ELLL-PDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL-
General information:
TITO was launched using:
RESULT:
Template:
1RYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45575 for 997 contacts (-45.7/contact) +
2D Compatibility (PS) -15208 + (NN) -4362 + (LL) 1028
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -69167.0 ( -69.38 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1RYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYA-query.scw
PDB file :
Tito_Scwrl_1RYA.pdb
: