Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKLKIGITCYPSVGGSGIIATELGKQLAEKGHEIHFITSSIPFRLNTYHPNIHFHEVEVNQYAVFKYPPYDLTLASKIAEVAERENLDIIHAHYALPHAVCAYLAKQMLKRNIGIVTTLHGTDITVLGYDPSLKDLIRFAIESSDRVTAVSSALAAETYDLIKPEKKIETIYNFIDERVYLKKNTAAIKEKHGILPDEKVVIHVSNF-RKVKRVQDVIRVFRNIAGKTK-AKLLLVGDGPEKSTACELIRKYGLEDQVLMLG--NQDRVEDLYSISDLKLLLSEK-ESFGLVLLEAMACGVPCIGTNIGGIPEVIKNNVSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEMLENEFSSKKIVSQYEQIYADLAEPE------
2GEK Chain:A ((21-393))MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASP------------HVKLPDYVVSGGKAVFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAE---GPIVATFH-TSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRWQMEALGS--DAVEIPNGVDVASFAD-----APLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQ---AGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSAQIMRVYETVSGAGIKVQVS


General information:
TITO was launched using:
RESULT:

Template: 2GEK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1952 -132111 -67.68 -377.46
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -67.68
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.527

(partial model without unconserved sides chains):
PDB file : Tito_2GEK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GEK-query.scw
PDB file : Tito_Scwrl_2GEK.pdb: