Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
1VL9 Chain:A ((1-119))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYMQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLD-----
General information:
TITO was launched using:
RESULT:
Template:
1VL9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63617 for 885 contacts (-71.9/contact) +
2D Compatibility (PS) -12672 + (NN) -6424 + (LL) 2624
1D Compatibility (HY) -16800 + (ID) 5000
Total energy: -101889.0 ( -115.13 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1VL9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL9-query.scw
PDB file :
Tito_Scwrl_1VL9.pdb
: