Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
3RYT Chain:C ((5-139))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP
General information:
TITO was launched using:
RESULT:
Template:
3RYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59180 for 919 contacts (-64.4/contact) +
2D Compatibility (PS) -14387 + (NN) -4824 + (LL) 328
1D Compatibility (HY) -19600 + (ID) 5050
Total energy: -102713.0 ( -111.77 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_3RYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYT-query.scw
PDB file :
Tito_Scwrl_3RYT.pdb
: