Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
3TB5 Chain:A ((2-251))
--ITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIES-HGGVAAQIGYEGYKYATCCSINDEICHGFPRK-KVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILTSQGEE----------
General information:
TITO was launched using:
RESULT:
Template:
3TB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147026 for 2211 contacts (-66.5/contact) +
2D Compatibility (PS) -27775 + (NN) -12694 + (LL) 1312
1D Compatibility (HY) -19600 + (ID) 4950
Total energy: -210733.0 ( -95.31 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3TB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TB5-query.scw
PDB file :
Tito_Scwrl_3TB5.pdb
: