Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITVQQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS |
3MPM Chain:A ((16-263)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLGAGQFGEVWMGYYNGHTKVAVKSLK-----QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAR----F-PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT------HGRIPYPGMTNPEVIQNLER------GYRMVRPDNCP-EELYQLMRLCWKERPEDRPTFDYLRSVLEDF--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3MPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -68228 for 1950 contacts (-35.0/contact) +
2D Compatibility (PS) -25913 + (NN) -7314 + (LL) 11648
1D Compatibility (HY) -20800 + (ID) 4200
Total energy: -114807.0 ( -58.88 by residue)
QMean score : 0.375
|
|
|