Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTISPILPVYSPININFSYGKGIYLYNIDGKRYIDFHSGIAVSSLGHTNLQLTSVLNLQGERLWHISNTYNIPTANNFAEKLINNSFADTVFFANSGSEAVECGLKIARVY-QNGKG-NKNRYRILTFHGAFHGRTFLTCATNDKRKFSELLNPYIDWCDNIEPN-IESVKKAISN-DIGVMLIEPIQGQGGIKVMNDAFMKELRKLCDENDILLFFDCIQCGTGRTGKLFAYEHIGVKPDICALAKGIGGG-FPLGVCLATEKAAQYITVGMHGSTFGGNPLATSVGNAVLDKLLSPGFLGNVEIRGKHLKNKLEDLASKFPIIEEVRGKGLMLGIKVK----MDNQKFAGELSHRGLLTVGATSDNVVRIFPPLIITEKEIDEGIEILTQYLSEKSSDPYQYER |
2BYJ Chain:B ((55-434)) | ---------YHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSD--VVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BYJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240242 for 3210 contacts (-74.8/contact) +
2D Compatibility (PS) -40285 + (NN) -17417 + (LL) 1048
1D Compatibility (HY) -24000 + (ID) 6050
Total energy: -326946.0 ( -101.85 by residue)
QMean score : 0.466
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