Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKNNGFIAFVRVNFYDGKDVLQPNAMISLPPKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNET-----------LHQFPIDNVFPLMGQTITTNDFLNILN
3MCW Chain:A ((31-191))
----PRNHPQAEQACAGLLQAWRARGLPLIHIRHDSVEPN----------STYRPGQPGHAFKPEVEPRPGETVIAKQTNSAFIGTGLEALLRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAEDGCFTFDKTDWHGRRRSADEVHAMSLANLDGEYCRVCGSADILAAL-
General information:
TITO was launched using:
RESULT:
Template:
3MCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73461 for 1087 contacts (-67.6/contact) +
2D Compatibility (PS) -15864 + (NN) -4765 + (LL) 1008
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: -100482.0 ( -92.44 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_3MCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MCW-query.scw
PDB file :
Tito_Scwrl_3MCW.pdb
: