Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNDIYFMTLAIEEAKKAAQ--LGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPC------VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN
2HXV Chain:A ((12-159))
-HMYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYF----GGPHAERMAIESARKK--GEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVS-GNGVEKFR----NHGIEVIEGVLEEEVKKLCEFFITYVTKKR----
General information:
TITO was launched using:
RESULT:
Template:
2HXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107000 for 1165 contacts (-91.8/contact) +
2D Compatibility (PS) -15349 + (NN) -8427 + (LL) 804
1D Compatibility (HY) -7200 + (ID) 2600
Total energy: -139772.0 ( -119.98 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_2HXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HXV-query.scw
PDB file :
Tito_Scwrl_2HXV.pdb
: