Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENF--VTHAKNGY-YDGITFHRVINDFMIQGGDPTA-TGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
4N1N Chain:A ((18-140))
------------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK----------------------------TEWLDGKHVVFGKVKEGMNIVE--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4N1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35728 for 877 contacts (-40.7/contact) +
2D Compatibility (PS) -12439 + (NN) -6031 + (LL) 4180
1D Compatibility (HY) -8000 + (ID) 3200
Total energy: -61218.0 ( -69.80 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4N1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N1N-query.scw
PDB file :
Tito_Scwrl_4N1N.pdb
: