Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKLAVVGATGLVGTKMLETLNRKNIPFDELVLFSSA-RSAGQEVEFQ-----E-------KTYTVQELTD--ARASEHFDYVLMSAGGGTSEHFAPLFEKAGAIVIDNSSQWRMAEDIDLIVPEVNEPTF-T-----------RGIIANPNCSTIQSVVPLKVLQDAYGLKRVAYTTYQAVSGSGMKGKKDLAEGVNGKAPEAYPHPIYNNVLPHIDVFLENGYTKEEQKMIDETRKILNAP--------DLKVTATCARVPVQDSHSVEIDVTLDKETTAEDIKALFDQDDRVVLVDNP---EN------NEYPMAI-N--STNKDEVFVGRIRRDDSLENTFHVWCTSDNLLKGAALNAVQVLEQVMRLKGAN |
| 1YS4 Chain:A ((8-354)) | KIKVGVLGATGSVGQRFVQLLAD--HPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPS--------------MAILDNLIPFIK--------NEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--FDVKYTALEHNTIRGAAGASVLNAEYFVKKYI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84314 for 2621 contacts (-32.2/contact) +
2D Compatibility (PS) -31726 + (NN) -9242 + (LL) 1256
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -149126.0 ( -56.90 by residue)
QMean score : 0.434
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