Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASVT-NDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNK-LNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRA--YGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
2OKV Chain:B ((1-147))
MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILCVSQFTLQC-VLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELES------
General information:
TITO was launched using:
RESULT:
Template:
2OKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61414 for 1043 contacts (-58.9/contact) +
2D Compatibility (PS) -16052 + (NN) -7820 + (LL) 184
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -98652.0 ( -94.58 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_2OKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKV-query.scw
PDB file :
Tito_Scwrl_2OKV.pdb
: