Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKN-VTSRSPYVQHMLRDIKKYEAQT----IPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPP-KNKTRQAYEDVIEWVGPKE
3BEM Chain:A ((13-217))
----MAEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQAANGQY-KVVSSSAVLLVLGDKQAYQQAADIYEGLKVL-GILNKQEYDHMVQDTVSFYENRG--------EQFKRDEAIRNASLSAMMFMLSAAAAGWDTCPMIGFDAEAVKRILNI----D-DQFEVVMMITIGKEKTESRRPRGYRKPVNEFVEY-----
General information:
TITO was launched using:
RESULT:
Template:
3BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87051 for 1410 contacts (-61.7/contact) +
2D Compatibility (PS) -21226 + (NN) -5915 + (LL) 1212
1D Compatibility (HY) -12400 + (ID) 2150
Total energy: -127530.0 ( -90.45 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_3BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BEM-query.scw
PDB file :
Tito_Scwrl_3BEM.pdb
: