Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKNILNLALVGALSASFLMAKPAHNANNSTHNTKETTDASAGVLATVDGRPITKSDFD-MIKQRNPNFD-F---DKLKEKEKEALIEQAIRTALVENEAKAEKLNQTP-EFKAMMEAVK-----------------------------KQALVEFWAKKQAEEVKKIQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTED------------EAK------------------------------------------------------------------------------------------------------------RIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK |
1M5Y Chain:A ((25-427)) | ----------------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNN--EVRRRITILPQEVESLAQQV-------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGK-----TTFAAAAKEFSQDPGSAN--QGGDLGWATPDIFDPAFRDALTRLNKGQMS-APVHSSFGWHLIELLDTRNVD---------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17268 for 1331 contacts (-13.0/contact) +
2D Compatibility (PS) -25636 + (NN) -14070 + (LL) 4820
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -64754.0 ( -48.65 by residue)
QMean score : 0.503
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