Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDF-LGLLPNAFLH-----FTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLENIDLNYS-----NLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
3M9Y Chain:B ((4-246))
-TPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESG--KANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA
General information:
TITO was launched using:
RESULT:
Template:
3M9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141619 for 1835 contacts (-77.2/contact) +
2D Compatibility (PS) -23718 + (NN) -8038 + (LL) 440
1D Compatibility (HY) -12800 + (ID) 3900
Total energy: -189635.0 ( -103.34 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3M9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9Y-query.scw
PDB file :
Tito_Scwrl_3M9Y.pdb
: