Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------MHEYSVV------SSLIALCEEHAK-----KNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDA---------------------------ILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLAE
1OXJ Chain:A ((594-763))
HMVGMSGIGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKERANILNRVEQELLSGQMELSTAVEELTNIVLTPMKPLESPGPPEENIGLRFLKVIDIVTNTLQQDPYAVQDDETLGVLMW-ILDRSIHNEAFMNHASQLKDLKFKLSKM
General information:
TITO was launched using:
RESULT:
Template:
1OXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21818 for 692 contacts (-31.5/contact) +
2D Compatibility (PS) -11834 + (NN) -3201 + (LL) -172
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -43375.0 ( -62.68 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_1OXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXJ-query.scw
PDB file :
Tito_Scwrl_1OXJ.pdb
: