Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFSIGEFSELVGIPSSTLRFYEKEGLITP-DRDKNNLRTYSEEDANWLKFLLHLKGAGLSIEELKQYTIWRTAGDSTISERLNMLKEKKIVLEQEIENLQKDLDTVVRKIGIYEEKVAKLDV
1R8D Chain:A ((1-108))
MKYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNF------DRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSV---------
General information:
TITO was launched using:
RESULT:
Template:
1R8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23462 for 631 contacts (-37.2/contact) +
2D Compatibility (PS) -11660 + (NN) -8358 + (LL) 916
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -50164.0 ( -79.50 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1R8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8D-query.scw
PDB file :
Tito_Scwrl_1R8D.pdb
: