Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKE---GRPFEEVIKEICSIVDGPVSAEVIGLEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGIKTNVTLIFTVSQGLMAAKAGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEIISASIRHIGHLEEAAEAGAHIATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQKEGN
3S1W Chain:D ((1-216))
MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVAIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVS-----
General information:
TITO was launched using:
RESULT:
Template:
3S1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140931 for 1809 contacts (-77.9/contact) +
2D Compatibility (PS) -23041 + (NN) -3896 + (LL) 36
1D Compatibility (HY) -24400 + (ID) 5450
Total energy: -197682.0 ( -109.28 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3S1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1W-query.scw
PDB file :
Tito_Scwrl_3S1W.pdb
: