Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQYKIKEMPLEELEPKVVE------GLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGGVTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTF--SYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL-------------
1YVK Chain:A ((5-156))
KLRIELGEETNDELYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRP-----------QTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDEDIFENGIQCRDMVRLYLDLL
General information:
TITO was launched using:
RESULT:
Template:
1YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46928 for 865 contacts (-54.3/contact) +
2D Compatibility (PS) -14050 + (NN) -3538 + (LL) 776
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -70240.0 ( -81.20 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVK-query.scw
PDB file :
Tito_Scwrl_1YVK.pdb
: