Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYEKARQMMIEAHSGQVRKI-TGEPYFSHPLNVARILRRAG--FREEVVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTGNLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNPSEIPPFFDEYARLVKWIFKK
3NQW Chain:A ((8-160))
KFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVN----TPTGWTQER--RDQYFVWAKKVVDNLRG------------------------
General information:
TITO was launched using:
RESULT:
Template:
3NQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17698 for 1100 contacts (-16.1/contact) +
2D Compatibility (PS) -16070 + (NN) -6060 + (LL) 1616
1D Compatibility (HY) -6800 + (ID) 2400
Total energy: -47412.0 ( -43.10 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3NQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NQW-query.scw
PDB file :
Tito_Scwrl_3NQW.pdb
: