Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VHNPNLFNTLKQN-EYTLPKDPNTSNEIIDTMLSYLSSTDSELRDNIAYNIFSEWLVVQDNLTTEQKMRIYNYAVNKN-NLLFK-INIID-SDAVFQRSFLAL--IIAL-LLENNKV---HNFLTDSEIRETLNLLIELLKNEKNTHSFIEEKGWAHCIA-----------HTADALDELIYQRT-ISEIDVKKIMTTIAFFY-KTNTKMLTGEED-ERLSNILITALFEQKISNEEVKNWLISISETIPSYLPEIPLI-NIKQFTQTLLIKLTVLN-YDVDF-SLFPIVTRYIRKNDDNSTNKKAL------- |
| 4DVG Chain:B ((8-312)) | EVVQQKFAIVAKEMKIDNPELIT-----IPNQWKLVQEYEKKQKKDIRIQLNAQKTGNWRNAITDPKYLADLLKTRDDMDLLNEMVVVFRSSSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEEDATVALIEIDGGVELLLKGMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKF--LSFFSLFSKSKSEKFKHASLVLINNLIDQ--PELEHRMDVRNSFIEIGLVNELENMKNTEWMKIDKIKDSINDFFDSWEEDKKEVESRFDDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27508 for 1838 contacts (-15.0/contact) +
2D Compatibility (PS) -28149 + (NN) -8992 + (LL) 412
1D Compatibility (HY) -8800 + (ID) 1950
Total energy: -74987.0 ( -40.80 by residue)
QMean score : 0.241
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