Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPA----VGGKVRYFFPEKIIRDIGGIP-AITGENLVANLKQQAETFHPTIVCSERVVDVTKLADGTFQLTS---HNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFP-FAIHYDVKNI---EQFRDKVVVVSGGGNSAIDWAQTLEPIAKKVHLIYRGEDFKAHEESVREL-KNSRVEIHIHHEISELIGTNNQLTEITVCCNQTQTTKTIETEALFINHGVKVDLGTMAEWGFKQAD-FGIVVDD-EMKTTVPGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG |
| 3ITJ Chain:A ((21-336)) | ---VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTT---EIENFPGFPDGLTGSELMDRMREQSTKFGTEI-ITETVSKVDLSS-KPFKLWTEFNEDAEPVTTDAIILATGA---SAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY--RQAITSAGSGCMAALDAEKYLTS----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ITJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210304 for 2698 contacts (-77.9/contact) +
2D Compatibility (PS) -31704 + (NN) -3712 + (LL) 1812
1D Compatibility (HY) -6000 + (ID) 3800
Total energy: -253708.0 ( -94.04 by residue)
QMean score : 0.488
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