Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF---VTHSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
3R54 Chain:A ((19-143))
-----------------------GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK---------------------------TDWLDGKHVVFGHVIEGMDVVKKI-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3R54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40292 for 875 contacts (-46.0/contact) +
2D Compatibility (PS) -12872 + (NN) -7303 + (LL) 4908
1D Compatibility (HY) -9600 + (ID) 3550
Total energy: -68709.0 ( -78.52 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3R54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R54-query.scw
PDB file :
Tito_Scwrl_3R54.pdb
: