Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKDNAVELEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVEAAKKNMVEVPMVGTTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISVSDLA
4AQY Chain:E ((4-151))
--------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKG------
General information:
TITO was launched using:
RESULT:
Template:
4AQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66341 for 1163 contacts (-57.0/contact) +
2D Compatibility (PS) -15701 + (NN) -1140 + (LL) 820
1D Compatibility (HY) -12800 + (ID) 4150
Total energy: -99312.0 ( -85.39 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4AQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AQY-query.scw
PDB file :
Tito_Scwrl_4AQY.pdb
: