Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDVKAVIRTGENTPYSNIILQSGVII
1OGD Chain:A ((1-131))
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLF-SEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
General information:
TITO was launched using:
RESULT:
Template:
1OGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79845 for 999 contacts (-79.9/contact) +
2D Compatibility (PS) -14422 + (NN) -8752 + (LL) -76
1D Compatibility (HY) -12000 + (ID) 3650
Total energy: -118745.0 ( -118.86 by residue)
QMean score : 0.701
(partial model without unconserved sides chains):
PDB file :
Tito_1OGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OGD-query.scw
PDB file :
Tito_Scwrl_1OGD.pdb
: