Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPTSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIM----ELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIV--GIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQV---LAKPGSINPHTKFKGEVYILSKEEGGR--HTPFFNNYRPQFYFRTTDVTGSIELPAGT------EMVMPGDNVTIEVELIHPIAVEQGT------TFSIREGGRTVGSGIVSEIEA |
3VMF Chain:A ((7-431)) | ---------KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVR-----SIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90029 for 3191 contacts (-28.2/contact) +
2D Compatibility (PS) -40406 + (NN) -13125 + (LL) 1324
1D Compatibility (HY) -30800 + (ID) 7000
Total energy: -180036.0 ( -56.42 by residue)
QMean score : 0.452
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