Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPTSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIM----ELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIV--GIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQV---LAKPGSINPHTKFKGEVYILSKEEGGR--HTPFFNNYRPQFYFRTTDVTGSIELPAGT------EMVMPGDNVTIEVELIHPIAVEQGT------TFSIREGGRTVGSGIVSEIEA
3VMF Chain:A ((7-431))---------KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVR-----SIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKP


General information:
TITO was launched using:
RESULT:

Template: 3VMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90029 for 3191 contacts (-28.2/contact) +
2D Compatibility (PS) -40406 + (NN) -13125 + (LL) 1324
1D Compatibility (HY) -30800 + (ID) 7000
Total energy: -180036.0 ( -56.42 by residue)
QMean score : 0.452

(partial model without unconserved sides chains):
PDB file : Tito_3VMF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VMF-query.scw
PDB file : Tito_Scwrl_3VMF.pdb: