Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
4C8G Chain:A ((25-179))
--RIGQGYDVHQLVEGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF--------GADSRVLLRACAERVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTNEKLGYLGRGEGIEAQAAALLVK-
General information:
TITO was launched using:
RESULT:
Template:
4C8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118644 for 1249 contacts (-95.0/contact) +
2D Compatibility (PS) -15996 + (NN) -6587 + (LL) 88
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -159239.0 ( -127.49 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4C8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C8G-query.scw
PDB file :
Tito_Scwrl_4C8G.pdb
: