Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYD--------CAADRAMTARRRG----VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1ZY1 Chain:B ((10-189))
---------GDPVLHEKAREVDPGEIGS--ERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFF-----EGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDLPLAEGCPKL-------------
General information:
TITO was launched using:
RESULT:
Template:
1ZY1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61495 for 1265 contacts (-48.6/contact) +
2D Compatibility (PS) -17964 + (NN) -1885 + (LL) 684
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -97060.0 ( -76.73 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1ZY1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZY1-query.scw
PDB file :
Tito_Scwrl_1ZY1.pdb
: