Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALGK
4TYP Chain:B ((1-205))
MNIVLMGLPGAGKGTQAEKIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLS------GFLLDGFPRTVAQAEALEEILEEMGRKLEHVIHIDVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMKPLLAFYDSKEVLRNVNGEQDMEKVF---------
General information:
TITO was launched using:
RESULT:
Template:
4TYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51710 for 1246 contacts (-41.5/contact) +
2D Compatibility (PS) -18556 + (NN) -13156 + (LL) 788
1D Compatibility (HY) -17600 + (ID) 4000
Total energy: -104234.0 ( -83.65 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_4TYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYP-query.scw
PDB file :
Tito_Scwrl_4TYP.pdb
: