Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLW---ARFD-PYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEVS-VITQNVDDLHERAG--SGAVHHLHGSLFEFRCARCGVPYTDALPEMPEPAIEVEPPV-----CD-CGGLIRPDIVWFGEPLPE---EPW-------RSAVEATGS-ADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1SZD Chain:A ((29-239))
-KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYP---PQVFKSKL-AEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITT---QQPLVIVVGTSLAVYPFASLPE-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SZD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61419 for 1284 contacts (-47.8/contact) +
2D Compatibility (PS) -19536 + (NN) -10172 + (LL) 3616
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -107261.0 ( -83.54 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1SZD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SZD-query.scw
PDB file :
Tito_Scwrl_1SZD.pdb
: