Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGE-----HGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADLIGDGAVA-LRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
1QJ5 Chain:B ((242-411))
LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAA-LQKFFVEQGVWIR-PFGKLIYLMPPYIILPQQLQ---------------
General information:
TITO was launched using:
RESULT:
Template:
1QJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84323 for 1047 contacts (-80.5/contact) +
2D Compatibility (PS) -17425 + (NN) -6696 + (LL) 1164
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -122130.0 ( -116.65 by residue)
QMean score : 0.141
(partial model without unconserved sides chains):
PDB file :
Tito_1QJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJ5-query.scw
PDB file :
Tito_Scwrl_1QJ5.pdb
: