Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEFHSGFVCLVGRPNTGKSTLTNALVGAKVAITSTRPQTTRHAIRGIVHSDDFQIILVDTPGL-HRPRTLLGKRLNDLVRETYAAVDVIGLCIPADEAIGPGDRWIVEQLRSTGPANTTLVVIVTKIDKVPKEKVVAQLVAVSELVTNAAEIVPVSAMTGDRVDLLIDVLAAALPAGPAYYPDGELTDEPEEVLMAELIREAALQGVRDELPHSLAVVIDEVSPREGRDDLIDVHAALYVERDSQKGIVIGKGGARLREVGTAARSQIENLLGTKVYLDLRVKVAKNWQRDPKQLGRLGF
1EGA Chain:A ((4-182))
-DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREG---KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE---------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135416 for 1341 contacts (-101.0/contact) +
2D Compatibility (PS) -19904 + (NN) -13649 + (LL) 8700
1D Compatibility (HY) -12400 + (ID) 2900
Total energy: -175569.0 ( -130.92 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1EGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EGA-query.scw
PDB file :
Tito_Scwrl_1EGA.pdb
: