Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLAETVGSRL-TKPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVPYLDSLPDDLTDVPVMVLDPMVATGGSMTHTLGLLISRGAADITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
1V9S Chain:A ((1-208))
MRITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLY---------QYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK
General information:
TITO was launched using:
RESULT:
Template:
1V9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168212 for 1598 contacts (-105.3/contact) +
2D Compatibility (PS) -21618 + (NN) -8667 + (LL) 516
1D Compatibility (HY) -17200 + (ID) 4350
Total energy: -219531.0 ( -137.38 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1V9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9S-query.scw
PDB file :
Tito_Scwrl_1V9S.pdb
: