Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPAPVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQG-ITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMH-------WRAVSADTPHVPVRYGNVVAE-------------VRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTD-----GRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAERIERDG |
2VEG Chain:A ((12-303)) | -------ICGIINVTP---------FALEQALQQARKLIAEGASMLDIGGE-----SSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFG--F--AFT-ELADFETLPIEELMEAFFERALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAIRLAD------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VEG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149188 for 2058 contacts (-72.5/contact) +
2D Compatibility (PS) -27866 + (NN) -19889 + (LL) 220
1D Compatibility (HY) -20800 + (ID) 4450
Total energy: -221973.0 ( -107.86 by residue)
QMean score : 0.487
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