Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEILVANEEVIEFGKGLVRIK
3VA7 Chain:A ((1162-1236))
------------------------------------------------------------------------------------EYPDDAELLYSEYTGRFWKP-------VAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV
General information:
TITO was launched using:
RESULT:
Template:
3VA7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55686 for 522 contacts (-106.7/contact) +
2D Compatibility (PS) -7232 + (NN) 7342 + (LL) 4204
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -55722.0 ( -106.75 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_3VA7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VA7-query.scw
PDB file :
Tito_Scwrl_3VA7.pdb
: