Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGSLNCIVAV-SQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEP-P--QGAHFLSRSLDDALKLTEQP-ELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQ-----DFESDTFFPEIDL-EKYKL----LPEY--PGV--LSD--------------VQEEKGIKYKFEVYEKND
3CSE Chain:A ((3-217))
-KVPVVGIVAALLPEMGIGFQGNLPWR-LAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQELEQRFYDNSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKK-
General information:
TITO was launched using:
RESULT:
Template:
3CSE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88490 for 1329 contacts (-66.6/contact) +
2D Compatibility (PS) -19339 + (NN) -5327 + (LL) -44
1D Compatibility (HY) -14800 + (ID) 3250
Total energy: -131250.0 ( -98.76 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_3CSE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CSE-query.scw
PDB file :
Tito_Scwrl_3CSE.pdb
: