Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MDRRMWGAHVFCVLSPLPTVLGHMHPECDFITQLREDESACLQAAEEMPNTTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFPPYPVACPV---PLELLAEEESYFSTVKI-IYTVGHSISIVALFVAITILVALRRLHCPRNYVHTQLFTTFILKAGAVFLKDAALFHSDDTDHCSFSTVLCKVSVAASHFATMTNFSWLLAEAVYLNCLL--------ASTSPSSRRAFWWLVLAGWGLPV---LFTGTWVSCKLAFEDIACWDLDDTSPYWWIIKGPIVLSVGVNFGLFLNIIRILVRKLEPAQGSLHTQSQYWRLSKSTLFLIPLFGIHYIIFNFLPDNAGLGIRLPLELGLGSFQGFIVAILYCFLNQEVRTEISRKWHGHDPELLPAWRTRAKWTTPSRSAAKVLTSMC |
| 3NOY Chain:A ((10-358)) | MIQKRKTRQIRVGNVKIGGDAPIVVQSM------TSTKTHDVEATLNQIKRLYEA--GC----------------EIVRVAVPH------------KEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKY-GYPSAEALAESALRWSEKFEKWGFTN--YKVSIKGSDVLQNVRANLIFAERTDVPLHIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAYEILKSLGLRRRGV--EIVACPTCGRIEVD---LPKVVKEVQEKLSGVKTPL---------------KVAVMGC---------VVNAIGEAREADIGLACGRG----FAWLFKHGKPIKKVD------ESEMVDELLKEIQN--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NOY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247403 for 2707 contacts (-91.4/contact) +
2D Compatibility (PS) -35314 + (NN) -7074 + (LL) 6000
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -298691.0 ( -110.34 by residue)
QMean score : 0.215
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