Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLKFQEAAKCVSGSTAISTYPKTLIARRYVLQQKLGSGSFGTVYLVSDKKAKRGEELKVL--KEISVGELNPNETVQANLEAQLLSKLDHPAIVKFHASFVEQDNFCIITEYCEGRDLDDKIQEYKQAGKIFPENQIIEWFIQLLLGVDYMHERRILHRDLKSKNVFLKNN----LLKIGDFGVSRLLMGSCDLATTLTGTPHYMSPEAL---KHQGYDTKSDIWSLACILYEMCCMNHAFAGSNFLSIVLK--IVEGDTPSLPERYP----KELNAIMESMLNKNPSLRPSAIEILKIPYLDE-----QLQNLMCRYSEMTLEDKNLDCQKEAAHIINAMQKRIHLQTLRALSEVQKMTPRERMRLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSRNFQQLSVDVLHEKTHLKGMEEKEEQPEGRLSCSPQDEDEERWQGREEESDEPTLENLPESQPIPSMDLHELESIVEDATSDLGYHEIPEDPLVAEEYYADAFDSYCEESDEEEEEIALERPEKEIRNEGSQPAYRTNQQDSDIEALARCLENVLGCTSLDTKTITTMAEDMSPGPPIFNSVMARTKMKRMRESAMQKLGTEVFEEVYNYLKRARHQNASEAEIRECLEKVVPQASDCFEVDQLLYFEEQLLITMGKEPTLQNHL |
2CN8 Chain:A ((10-301)) | -------------------YPKAL-RDEYIMSKTLGS----EVKLAFERKTCKKVAIKIISK------------NVETEIE--ILKKLNHPCIIKIK-NFFDAEDYYIVLELMEGGELFDKVVGNKR----LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL---TSLMRTLC--PTYLAPEVLVSVGTAGYNRAVDCWSLGVILF-ICLSGYPPFSEH---VSLKDQITSGKYNFIPEVWAEVSEKALD-LVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155263 for 1753 contacts (-88.6/contact) +
2D Compatibility (PS) -26396 + (NN) -15519 + (LL) 29176
1D Compatibility (HY) -27200 + (ID) 4500
Total energy: -199702.0 ( -113.92 by residue)
QMean score : 0.382
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