Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIKNNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNLSCFEAFADSIHI-----ENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFHKL--EKTDKIEIVSIANILTHFIQGGKDAS
3S5J Chain:B ((4-306))
IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSR---APISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLN--------VDFALIHKE-------DRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGE
General information:
TITO was launched using:
RESULT:
Template:
3S5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -254119 for 2436 contacts (-104.3/contact) +
2D Compatibility (PS) -31942 + (NN) -17902 + (LL) 1252
1D Compatibility (HY) -23200 + (ID) 5050
Total energy: -330961.0 ( -135.86 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_3S5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S5J-query.scw
PDB file :
Tito_Scwrl_3S5J.pdb
: