Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDITSVSDQNFKSEVADYKGFVLVDFWAEWCRPCKNLMPRVEQLAKDKKGKIKICKFNIDGGAEVLSKYGIQSIPTLIIFQDGKEIARKIGTINDLSSWVDDEIS
2YJ7 Chain:A ((3-92))
----VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH
General information:
TITO was launched using:
RESULT:
Template:
2YJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63264 for 624 contacts (-101.4/contact) +
2D Compatibility (PS) -9997 + (NN) -6156 + (LL) 28
1D Compatibility (HY) -9600 + (ID) 2000
Total energy: -90989.0 ( -145.82 by residue)
QMean score : 0.718
(partial model without unconserved sides chains):
PDB file :
Tito_2YJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJ7-query.scw
PDB file :
Tito_Scwrl_2YJ7.pdb
: