Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVNNISYLYNNQDDFALNNINIKVKRGKVACLLGHSGCGKSTILKLIAGIENPKSGTIFINDKLVASSSTSIAIEHRNIGLIFQHSALFPHKTVVENVTFA---IRSSSKKEKHLIALEILKLLNIAKYENMYPNALSGGQQQLVAIARVMAQNPDVVLLDEPFSNLDILLKCQIRQRILSLFRSKNIPVLMVTHDPQEALKVADFIYVMKNGRIIQSGISSDIYHRPKDDTLAKFFSELSSTLQLGEKFPLDGAFAVRK
2OLK Chain:B ((40-262))
-----------------LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF-------------------
General information:
TITO was launched using:
RESULT:
Template:
2OLK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164833 for 1741 contacts (-94.7/contact) +
2D Compatibility (PS) -24325 + (NN) -13180 + (LL) 2232
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -222506.0 ( -127.80 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2OLK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OLK-query.scw
PDB file :
Tito_Scwrl_2OLK.pdb
: