Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHN-------------------GNGNRDE--------PVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMM---GYDTTP------VERDEVTAATTAYGIMKGVRAVRVHNV---ELNAKLAKGIDFLKENENARHNLS |
2VEG Chain:A ((9-303)) | --KTVICGIINVTP---------FALEQALQQARKLIAEGASMLDIGGE-----SSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGF--AFT--ELADFETLPIEELMEAFFERALARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAIRLAD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VEG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130790 for 1989 contacts (-65.8/contact) +
2D Compatibility (PS) -26917 + (NN) -22005 + (LL) 28
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -202784.0 ( -101.95 by residue)
QMean score : 0.752
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